Scaffold Ga0211732_1334212

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1334212
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19172
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F020169	Metagenome	225	Y
F029756	Metagenome	187	Y
F044489	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_133421213	F044489	AGGAGG	MNADHTLTQLKAFCKTQSGDEQTWINKGTTYHWNRGKDTSTGLVNGVVRKLAGIDASGHQIWVVAGSLKIESTGTILRFTGIPRKVQKTFEPVAQTQVAQTQTQPELETA
Ga0211732_133421224	F029756	GGAG	MNKRKITTRVIFDGVIDNTFTQMRQVYADENGEYVNCTRNRYYIENDSFDIVYTTGRAISVKELFKGMI
Ga0211732_133421227	F002268	AGGAG	MSGTPTSSSPGITGFIEIFEGRLNKMKLHLKEELSKAKHERDKQAIKRIVVDARKLNRTLKEMRNANTKLCPHCGEKL
Ga0211732_133421230	F020169	AGGAG	MSSTVRIPWTIKIDNEGYWNEVCIWAIERFGLPGDRFQTHANVNYMDFVFNSNKDALMMAIMWNGQIVPDEYLTEFI