Scaffold Ga0211732_1307922

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1307922
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2580
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F086640	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_13079222	F026552	N/A	MEIEKVIEKLLNRDSFLNLLENDIIEKFEVSISPYESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAYIIPNKILKPLVGKDYFIKIILFVVDKNGIHLFTE
Ga0211732_13079223	F049442	N/A	MNKENLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDTDDEGNWVSAESYYFTVYSDNFNGSQPLIELYNLARELFGNIIGNSNWIDIEFKNYEN
Ga0211732_13079224	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQKEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDDMLFKLIEEGKLVKAYRLHRNLNTNVDYVDYELLDDMLNNPETKDIVRLLPNLKNTLINYYS
Ga0211732_13079225	F086640	N/A	MKKFILLEEEKLQIKSMYGLTEATMTPPAPVRPTTVMDTLAVTPNKLLFQNSTNNNNTIFLSIRDAAGKKIPNTTYKYKIGGSFKGINFNVNVRNLKRDEQGNLTGEALPSNSSAAWLMRQAMPDDILTEDDWLKILVPNEKLNQGIQSLKSTKGQTAKIDAGQGVSITLQYVGK