Scaffold Ga0211732

Basic Information
Taxon OID	3300020141 Open in IMG/M
Scaffold ID	Ga0211732_1299706 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020141 Open in IMG/M

Scaffold ID

Ga0211732_1299706 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4848
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4848

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	10 to 20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

10 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F015472	Metagenome	254	Y
F033432	Metagenome	177	Y
F039133	Metagenome	164	N
F081344	Metagenome / Metatranscriptome	114	Y
F085699	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12997061	F008494	N/A	AVGLYTSAIDKTAESNITYKKSVYALEDAVNLIYREVDVKELGSNAETRNAKVSEKTQNLILAKREAEYILETARANESRIKAEVDQIKYIIRALEVKEEA
Ga0211732_12997062	F085699	GAGG	MKACLNVGHTGAAGVNSEKQMQNLKDVTDHVKEFFSANDDTFALVRNVSGDLIPGGLSSFKFARAGEGIFFSNGLPVVFVTRLSSENGYDANVGKWYRKQWYYENYLRKLNPNCTHLTFIHASESAGLLNALVSGVSMVMAQEFNQHTYNTSNPGGNTIYCYDTDMQTDTWYDIQQKLIAMVKQSKPDPFK
Ga0211732_12997065	F081344	N/A	MNEDIIHRLLYVAVWGGGLLAFFGHMRLYTATGLKTLKNILTIIACATPLALVYGLFEWIFTGNGESAYWLFQSGVIACVFGLFYYFLCCLLCSEKVWNKSRREI
Ga0211732_12997066	F033432	AGG	MTNYRKKFLSLWSSIMAEERWHAIDSVDCIPNCKGWNAWAPLCECGTNFCTFKPSGDTEDMKLVIEVRPIEKRK
Ga0211732_12997067	F015472	AGGAG	MAHFYLNQGGTRWVTDSKILVTGFSNGKRYHKMRKPMYWEQFGNFVRCYVRVGDNVFRGATEDSNGVIELKLEKCFRVR
Ga0211732_12997068	F039133	AGGA	MNTTDKVIVRFKSRTPKMLYTAHYNGLLLASGHDPIDLGEFYASKYATEWILHDGNNFYTQRGVNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211732_1299706

Overview

Ecosystem & Geography

Associated Families

Sequences