Scaffold Ga0211732

Basic Information
Taxon OID	3300020141 Open in IMG/M
Scaffold ID	Ga0211732_1288974 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020141 Open in IMG/M

Scaffold ID

Ga0211732_1288974 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4406
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4406

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (93.75%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	10 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

10 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F050377	Metagenome / Metatranscriptome	145	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_128897410	F063705	GGAG	MSKSSVFLEYMKLHLISLNQDWEATKNGEPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERYE
Ga0211732_128897413	F000441	AGGAGG	MRMSDVYINDQLSKAQKLLWGGSETENIEAHNIIAKLIKDRIEQVEQ
Ga0211732_128897415	F050377	AGGA	MTTSTTTREYLKAQGIAVGKRGRFSAAALGVISKAEKEGVVFSDKKLAK
Ga0211732_12889742	F001043	AGGAG	MSDYKDGFDDGYKFAREEIMEKLSEIDINDIDSWILDRLSEMIEGGSL
Ga0211732_12889744	F001125	GGCGG	MGDRANFGFKQNDGNTLYLYGHWAGHNMLAKLANAVQAAEPRWQDPSYATRIAISNLVGDEWPQTTGWGLSINRILDNEHKIPVINWDTQTFTLFEEDLITEVFSLSLANFVDKYSRLVM
Ga0211732_12889746	F002387	AGGCGG	MSSFLEDVNQMVIDACYQDIAEQLLENWINSNLEEGQYYADKQFAWMSDDKFVQSEFNKFYNLTEIDEDYFEIL
Ga0211732_12889749	F001460	AGAAGG	MLGYTAEDLDRMTNAVHDAKLFYLRTPSDLMDKTELRKDLEDTVSFLQGLWAEGYFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211732_1288974

Overview

Ecosystem & Geography

Associated Families

Sequences