Scaffold Ga0211732_1256888

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1256888
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4167
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F010227	Metagenome / Metatranscriptome	306	Y
F099274	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_125688811	F000652	AGCAGG	VTGFNSKRAMARDKLKGAGMKKVIVRTELMQELEVPDDWEREHVLDFLGEFQSFRTAFQGVSNEDQTARIVDLGVVIETVEQLGEETFDE
Ga0211732_12568885	F010227	AGGAG	MQATTFDVSNKLTLAHTDTDTDSVSTTYDCNVEVQLAGDSCWDCEIEAVTVTSINIHETFWDGDSSIHITVCYNVDGDPEYEDSWRLYTDTGFEEAISALLGTSVSFTEQGMQDDGFASMEL
Ga0211732_12568889	F099274	AGGAGG	VAKVDGETVKVGDYVCFKSDVEQCGKIYLIKGDRLYLQAGSNGFRGDYIGGAETTVQLSSECWIE