Scaffold Ga0211732_1237141

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1237141
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9057
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036693	Metagenome / Metatranscriptome	169	Y
F039621	Metagenome / Metatranscriptome	163	Y
F044497	Metagenome / Metatranscriptome	154	Y
F073096	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12371411	F039621	GGAG	MKSSILGMWLGVILVLVVIAPLATIWSLNTLFPILNIPMGFDTWLAALILAGVV
Ga0211732_123714111	F073096	GGAG	MKKLILLSLVLCLNGCSILALWPKPHDPVMFDNIVSTKIAVEKLNCDDKNWTDAETKLQHLKVYSELRKDPQATSIAQLQEAINKAKASDKKLFCESILKINKTRIDVIVDAWKGR
Ga0211732_123714117	F044497	AGGA	MYEWILALALTQEPVRKWPEWECVRWTWTGDVYERRVVCLEWRKRK
Ga0211732_12371414	F036693	GAGG	VYNKPLKPKNLVAKDLRTPKYRMRVVESKVQYIRQPKHRKADHGLGV