NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1229272

Scaffold Ga0211732_1229272


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1229272 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8980
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F002268Metagenome / Metatranscriptome576Y
F008554Metagenome331Y
F011224Metagenome293Y
F029756Metagenome187Y
F088912Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_122927210F088912GGAGMTEGERAGRWAMLYLYTVLFALWFNIVCIAAWFIREWFL
Ga0211732_122927214F011224GAGGMSAYMAYFDTLGFEWIFDISDYEKKKFWAALKGDTKVDMPIPRYAILRAQANPQRFPEIWAFESDISRDELEAYARDNPQVLADAIRNCGQNVFKTHRPETVID
Ga0211732_122927219F008554N/AMNIEDEMIERAGKAMAREIDREVMWGMLEGIGWTRVMIPTMGDAYRAVDIITWLEDNCKHAHERSGRDFIFEDSKDANWFILRWGTV
Ga0211732_12292722F029756GAGGMNKRKITTRVILDGHVDHTFTQMRQVYSDTTGEYVNCNRNRYYITNDSFDIVYTTGKAISAKELFKDLV
Ga0211732_12292728F001008GAGGMSKAKHKPYQWIDGETADRITSMNLKDYRAYLKKELREWKKNPKSDANPTGYWLHPEDVSGNMQTIAALDLIISHFPETPDEIK
Ga0211732_12292729F002268GGAMSENTGITGFIEIFEGRLQKMKLHLKEELGKAKSDRDRKAIRRLTADARKLNRTLKEMRNASARLCPHCGEKL
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