Scaffold Ga0211732_1223464

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211732_1223464

Scaffold Ga0211732_1223464

Overview

Basic Information
Taxon OID	3300020141 Open in IMG/M
Scaffold ID	Ga0211732_1223464 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2925
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	10 to 20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018529	Metagenome / Metatranscriptome	234	Y
F023790	Metagenome	208	N
F094947	Metagenome / Metatranscriptome	105	N
F098695	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12234641	F018529	GGAG	MNLQDFKKIFTEYGGAISPEQLEPLAEFAPDLPLGVKVGYGLRFVTSAKNFKSDLENNIKYQRETHNVEQYVRDVFVPCSAYDKVRNIFGWDNKE
Ga0211732_12234643	F023790	AGG	MKILSQTRRFETKTTVEDNKILYIVSTRGELLPDNTQSKAITFDFQRLDGKKLTEKENKIGDEIFNNIIKDKP
Ga0211732_12234644	F098695	N/A	MIVDKISSQAGLARFASFTYESKSTGEVARYTIQLGFSYRNCLEKSKLALEIESASLDGLDKQAAEELLNSFVASLNGTQENYTKQEIYADVTDSSGKTVQGIKRNINDNSLQIFGLLHSKVQISPATIEDKPVKSRPLTIAKNKLRKDLPVGKFREFALENLNVVKLNGETLELA
Ga0211732_12234645	F094947	N/A	MNYPIKNALRQLVCKVYETATKDKQTITTVSLPGDCWEFEHFVNDNFNFRKHFGKPIKEMDNHLFERNKIVFETNQLTAKEFTDTGIFHYYNQEVKHNDSDFFPSESECVFTWFDFCGNPNFFNLNYCHSWSAKQTHLLTFNLAWRCSDNIPTDILTACKTQSKEQAVLDYLQKLIDTEYKGFRYVIAFSINYISNHTPMILICITNDVGVVIEDFGIVNSTYRKEKLPDPPALIKVKADKQEIYSDLLSGKSDKEIMDKYSLKTMQLAAHKAWLTMWGKW

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