Scaffold Ga0211732_1216495

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1216495
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6036
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F021288	Metagenome / Metatranscriptome	219	Y
F063623	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12164954	F001507	N/A	MTTTYKPHTIDELLTEIYEDNYSHFEFMTEMNGGDCDCSLHITMNTIVRYLGE
Ga0211732_12164955	F021288	AGGA	MTDLNNMKYGVDSALLVLDSDEHPAIHNYLVTASDFLGGLWAEGYFD
Ga0211732_12164957	F063623	GGA	MDKLQPRLQKAVDVGISGLDIIHGELKHMMLEAEEGLNIAQAEEDESGEAMDSMERKYWEGQLDALSIVYELTYKLSFAIGDKNA