Scaffold Ga0211732

Basic Information
Taxon OID	3300020141 Open in IMG/M
Scaffold ID	Ga0211732_1205099 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020141 Open in IMG/M

Scaffold ID

Ga0211732_1205099 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3028
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3028

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	10 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

10 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014128	Metagenome / Metatranscriptome	265	Y
F028094	Metagenome / Metatranscriptome	192	N
F041768	Metagenome / Metatranscriptome	159	Y
F069711	Metagenome / Metatranscriptome	123	N
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12050991	F041768	N/A	FNEEVVISKMLTQEELREFRKGLDISNDLAKDVENAAFDKMDSKAFFGDKYLEYKKKIYDNINSFRALINDSSEKIIKDESKLLNIYLYCLAGIVLALVYLIKQENRAPIKKKPIKKKKQ
Ga0211732_120509910	F028094	N/A	VDFLLDLIPFRWGWRAKNWPRAIRWWAKCKYQKMRYGVSDDDVYSLGYNIALFVLPRLKYFKKKGKTGIPCCFLPDDFHVLEGEEQTAAEEKGIKEMEFALDEMIFAFEYIIDGDKFCELPESLSFKGKDFDFNSEKTIEEKESWKQYMEKANELNDRKNNGLILFAKYYDTLWI
Ga0211732_12050992	F014128	N/A	MEQLQKMGIQIGFLISGMFGAILMATKNDKTDAKSVILSLVGGMSAANFLTPVLVDTLNIVNIKHQNGVAFIAGFLGLKLVELVSEKLLEKVGKPNKIQKKKTIKKRVPKS
Ga0211732_12050997	F080979	N/A	MQDNKPINMTKVSAKEEKNYKLLKEGQDFLVGDLIHLVDDEYVKINESNQLLKTKVTKYNKVLRKIK
Ga0211732_12050998	F069711	N/A	MKFTPEQRELIKETRAKINKMQVEQNELYTNLLSKLNLSERSEDWIFDYIFNQYGTIKNIENKSSKKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211732_1205099

Overview

Ecosystem & Geography

Associated Families

Sequences