Scaffold Ga0211732_1198490

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1198490
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3887
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F017829	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_11984902	F017829	AGGA	MANRFRVEIYDANKANDITIYSEQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFSKNKISNVI
Ga0211732_11984906	F000311	GAG	MYFELTAPSQVAFARAIWDAEIIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYNLKESYLSEKETTGY
Ga0211732_11984907	F001043	AGGAG	MSDYKDGFQDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGGNL
Ga0211732_11984909	F001125	GGCGG	MGDRANFGFRDSKENIIFVYGHWAGYRMLENLADAVSAAEPRWSDESYATRIAISHLIKDEWASETGWGIYVNQLGDNEHKVPIIDWKNKTFTLMEEDLKTMVFSTSLEAFVKKYSSQPSMV