Scaffold Ga0211732_1157031

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1157031
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2728
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027747	Metagenome / Metatranscriptome	193	N
F030080	Metagenome / Metatranscriptome	186	N
F050913	Metagenome / Metatranscriptome	144	N
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_11570311	F050913	AGGA	MRTKTYIQGFKNSQKIRVMFDGIGVYTTVAGVSSVFATYTHSQAANDALMRLSYMRYMAQKDGALVPTGLGMTSYNTSQVGTQVQIDLI
Ga0211732_115703110	F030080	AGGA	MYIDGMGPRQSMAVEILDTVRFGGLDKIKGANGYSKKKLATGDAYVVPFGLNKNIFGAVVISAPKRLYITYKINNVAETVRMKYAWEVKRFLVNRFIQNM
Ga0211732_11570313	F027747	GGA	MLAVLLLTFMVLNMITYKFYVGKDVYEFTAESKLNAMEMCNRQVIDKLDLHPMAWFDAGQNSFSYQSGNFFD
Ga0211732_11570314	F067732	AGGA	MKIETAIGILNKEREFLGMGFLELLQDIQSEGKMVYSERVVEAFERFMVDGRKMFAVAE