Scaffold Ga0211732_1155961

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1155961
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25684
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069833	Metagenome / Metatranscriptome	123	Y
F093295	Metagenome	106	N
F099304	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_115596110	F069833	N/A	MNAETRVYEKMNQIRYKKVGRKYVQDSDIWAYEGLREGWWLVKVAPGSTSIRQQVYPYKAEITAAARDKEDQLVDIIRKASEARPSQNPLTPEALADWQAFIAKHGKEFNTLEYPSIQENAEKIIEALLK
Ga0211732_115596130	F099304	N/A	MKPTIQFVSELTDQEAKQLLFDIYERVPIAGEDLSYAALPDKITRYVNEANRLTLLEEAVTQYIVEECSNGNIGVQDPINFLLASHRMLRHNIHELYKEEY
Ga0211732_115596133	F093295	N/A	MIKRIFQDLDECILHTTVNNDPNQTHVKFTLSEDLHIYRTLIRPCAKKLFAYYNDLVGKENVYILTTATRKYAEALNRLGEFGLDYAHIFTREDIQQHKTHFGNRGEGMMKLPIADKDNVLIDNLPPRYNDYKMDMMGIVTKNYHQTPEYFGNNLNDEDFFENIKKFLKDRL