Scaffold Ga0211732_1123328

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1123328
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2771
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038245	Metagenome / Metatranscriptome	166	Y
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_11233283	F038245	AGGA	MKIYFGNANDDMFGDGLFEANDNQYYYGVEHGTGPGGLDEVRLFDGCNRYLPVHVEAIPELIAALQEIQKIQQAVKQAQEMTERAESETTGYVYSSWNDEFEVDFDTE
Ga0211732_11233285	F078719	AGG	MEVIEVYFLFALTTGITSCYVFLSPAVALARDTGVRNSFTENTWLSYLIYITITTITAPFSVLPIFIPSFAERFKAGLEKSVMESQT
Ga0211732_11233286	F099303	N/A	MNFLEFTYTKADGTESKRAAIPLFGPTKFVEAIDVSQMPEDEFAVFCREFSALKSAQHEQTMAILEQFDLKHNYRKFNPEQMSDITTDYV
Ga0211732_11233287	F070116	N/A	MSKFRTWDSEILTDAVKISLQIRTKIEEMCVATHSPPDGLPNSLIPTDNLYSLVCAYEAAYNALIENDLIKTGNLKTDKNIH