NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1054525

Scaffold Ga0211732_1054525


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1054525 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9484
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (62.96%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F007921Metagenome / Metatranscriptome342Y
F021988Metagenome / Metatranscriptome216Y
F031497Metagenome / Metatranscriptome182Y
F051117Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_105452513F007921AGGAMIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSMWEYEKEGPTNLTWSEGDTWYGWTFNPVNNRYYFDDIGNKSLMGLWEDQWLREAETNGAM
Ga0211732_105452519F051117N/AMNDALCTKYGCDYKLDLDGQVTCDNCGAMGDDMPNPQPDLDNVGYGYDELKDFDMGLKDNNKNKITPFFGPNR
Ga0211732_105452523F031497AGGCGGMSKTPEIKVAESLVNLMDDHWFNATIFGHYLAQQPLYTIDRIMEMIVSVISEQSKMLHVYSNQGSSSEGLMLANELNECIKAYQENNQLNNLKLPSRSYKVKREEPVKTNIFGWKEEEDPFS
Ga0211732_105452524F000852GGAMATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAETPTSKAK
Ga0211732_105452525F000441AGAAGMSDNYINDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDRVEQADLL
Ga0211732_105452527F001019N/AYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSIPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEATR
Ga0211732_10545259F021988AGGAGMTNSFKKEDGTSTVPPANAGAPAGAVTSTSTPKRYPRQGVKIDTNKHGIRRETSLIPKPPKKSGRKKV

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