Scaffold Ga0211732

Basic Information
Taxon OID	3300020141 Open in IMG/M
Scaffold ID	Ga0211732_1054525 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020141 Open in IMG/M

Scaffold ID

Ga0211732_1054525 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9484
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (62.96%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9484

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (62.96%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	10 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

10 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F007921	Metagenome / Metatranscriptome	342	Y
F021988	Metagenome / Metatranscriptome	216	Y
F031497	Metagenome / Metatranscriptome	182	Y
F051117	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_105452513	F007921	AGGA	MIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSMWEYEKEGPTNLTWSEGDTWYGWTFNPVNNRYYFDDIGNKSLMGLWEDQWLREAETNGAM
Ga0211732_105452519	F051117	N/A	MNDALCTKYGCDYKLDLDGQVTCDNCGAMGDDMPNPQPDLDNVGYGYDELKDFDMGLKDNNKNKITPFFGPNR
Ga0211732_105452523	F031497	AGGCGG	MSKTPEIKVAESLVNLMDDHWFNATIFGHYLAQQPLYTIDRIMEMIVSVISEQSKMLHVYSNQGSSSEGLMLANELNECIKAYQENNQLNNLKLPSRSYKVKREEPVKTNIFGWKEEEDPFS
Ga0211732_105452524	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAETPTSKAK
Ga0211732_105452525	F000441	AGAAG	MSDNYINDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDRVEQADLL
Ga0211732_105452527	F001019	N/A	YEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSIPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEATR
Ga0211732_10545259	F021988	AGGAG	MTNSFKKEDGTSTVPPANAGAPAGAVTSTSTPKRYPRQGVKIDTNKHGIRRETSLIPKPPKKSGRKKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211732_1054525

Overview

Ecosystem & Geography

Associated Families

Sequences