Scaffold Ga0211732_1003199

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1003199
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1503
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_10031991	F105192	N/A	MDISLTQILITLLAAAISGAFTAQINHIRAKKERIARLEDKAHDQLLLEIKDLQIKLYQLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLTHIEMHSDED
Ga0211732_10031992	F072349	AGGAGG	MDRILCYCCNKSKNELATKKSALLPVNLLLCKSCTDNKLEPRWIIILAGRQYGSDHVKEHIAKKRYLGLDITASELLI
Ga0211732_10031993	F011394	AGGA	MFIDKNKDHFKYGVNEWTGEPNKPTFYNKEMALKIREIKKPTPTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG
Ga0211732_10031995	F066776	AGG	VLHLTEKGVEIFIKRSQTKLQESFWNNYELVIWKKDGGGYTDTNGMYRKDAWGKAEKISVNREGIWKLPKKYVKYFK