Scaffold Ga0179590_1025633

Overview

Basic Information

• Taxon OID: 3300020140
• Scaffold ID: Ga0179590_1025633
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1420
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007488	Metagenome / Metatranscriptome	350	Y
F009517	Metagenome / Metatranscriptome	316	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0179590_10256331	F009517	AGGGGG	MGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGIAE
Ga0179590_10256332	F007488	N/A	MKIRAYDEGDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALERGLEDVHAWLPPEIAKKFGKRLGRLGWIRDDEWTPYCKKLI
Ga0179590_10256333	F106044	AGGAG	MPNLTYNATWDFNPADTVTLNAAFTFDLQDPNYNQTVSGVLTTLQGRTPHVTLAQTDNATISVAVTIQG