Scaffold Ga0179590_1000671

Overview

Basic Information

• Taxon OID: 3300020140
• Scaffold ID: Ga0179590_1000671
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4574
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F002349	Metagenome / Metatranscriptome	568	Y
F067067	Metagenome / Metatranscriptome	126	N
F096699	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179590_10006712	F067067	AGG	MKREPFQKANLVFSIQIINRVGEPRIYQVAITGDDVRNFFVGITPIQNARHGVKALIQTWCEQHGDKWPKDGETVAMDLDEVQVARQRLG
Ga0179590_10006713	F096699	GGAG	MTNEYRIESVSNAFIVIDDLGEPVGRYPTEEAAQQDIERCKKEDAMWETAKLLVDTAIKSHMKIHGVDRETAAYWINSALGGA
Ga0179590_10006715	F002349	AGGAGG	MVVCCVNHCAYCRAPIASGERWVREKVYDPALNGRDPSYHRYHAEPFAGQEASCWERHQMETEIGRTDAYAA
Ga0179590_10006717	F000313	AGG	MKIIERWLLFKYVEGQFTPLSKPFKSKAAAEKARSKLPERERRSVAVGVIRIEK