NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194112_10272415

Scaffold Ga0194112_10272415


Overview

Basic Information
Taxon OID3300020109 Open in IMG/M
Scaffold IDGa0194112_10272415 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)400
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024098Metagenome207Y
F055669Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0194112_102724151F055669N/AMSVTLIAYPLNDSDIEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNEQCFGFAYNIQSFVGGFTPNKKIRAAMWENGVQVFSGVLQLLS
Ga0194112_102724152F024098N/ARVVETLIAPTVPTLTQAGFADHAGFYSGYRLVFMEEFGTTPVVQTGTTTTVSGKIAFAGNLEQLELADWSGGLYFPTILQQGDEAKALTTPTGRTVYAGGYGFLCAGQSGTTVITSMKIAYYNADGSLIREYSVSVPASVSGSIMRFGAGPMNIKALTSGQCSDSQAGSVGFPTAEGAYYLLIFTDPGSGDFNTQQYTIGPCQRFNSQPVHFVNKFGGIDSYTFTLKNRKRANVQRDVYGYNTDVFATLTHDKVWAGSFDYVYALNSDYLTDDESSWLIELLRSSQVWLELDGTLVEAVVNANTYQFVTRRNDQLQQLQLEIAVAYKNNIL
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