Scaffold Ga0194110_10074490

Overview

Basic Information

• Taxon OID: 3300020084
• Scaffold ID: Ga0194110_10074490
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034542	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194110_100744904	F034542	AGGCGG	VARKRGSDNFGFRDFKATNPVNQPRTIRGSDNAGELLRPLPFKRRFRPVTGTKNFSLLSDYDYASLWARWRRGYELAMYSQQAYEGLTYSFKYFVSGAPGVGTFLPGIAFMYPTTRADMRMWMVGIRPRDSFNFLNFGYSVVSVTDYDANTYAVRLSSNFGAPISFFAGEVLSNRYNADGTEKAYGYNNYTVTAVGINGVPQAPGFLPIFNTLFLSHTEANSWAVVNSTTMAVPATGPPAVGEYLTTEMRSQCTCPDFLAREGFNLYEASLRRKYPFTRVQNTNPGFYDAGPDSTVRQVPSNDNPGFARTFGFIYLNEIYNIPEYTEAVYSDPNVFYYQPRWCKHIYAAMWDLQLRFGQTTTTSMWLAQPNDEPMNEYYREKFEIDLAKQTDFFKRERNLVWWQRYSPAKNDMPTHMMYPDMYNMMGKTLNFGNINSLTPMEAENFEMFTIEEFDPFAPINFDQLQVYDGGTYANGVLVSQPINTFVGGQYANGVLIPPAGFPSLINGGTY