Scaffold Ga0194110_10020359

Overview

Basic Information

• Taxon OID: 3300020084
• Scaffold ID: Ga0194110_10020359
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6780
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y
F034858	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194110_100203595	F021068	AGG	MNCGLRVMFMQPFDCTIYAVCIDGEEVRYEAKSEIIPILGGAWAITDEKRDALRQKGYVFDNEGGYMSALNERWGELTCVQWMLLNAEEKNIGNAQYRRNWIEPHDEWYADDTLYVPEPAVFACSLEQQFYGGHRDFDAPAITRELADSGQWVFSRKEIDAVWHQNLFIGCNMARGPKREYKEFMTVLFHALIPIWEKHKDRFLSIEGYDKRAIAFIAERIITGLVLHRDRILPNVKIATAPIGFIN
Ga0194110_100203598	F034858	AGG	VSAAFISMASPQIKFCISTCKTFAPHTIPVVIGSMIRWGIKAEEILIVNGGWETDAVSSYKGVEMLLVKQNSFEYTPLIEIVERELWSDYWFLLHDTCTVGERFNSLVRALPVEQPKKVAMKGTPSMSVGLYSMPYLMQHKDRLTAIKNFDLSREGLQAWKQWGVPNEDYMLWKLGDVPTHVYHPELHGPDEWNYQGHADFYDTGHPRRVEYFPQLDLYKAKSNWQGVQPTLCIDI