Scaffold Ga0194111_10106856

Overview

Basic Information

• Taxon OID: 3300020083
• Scaffold ID: Ga0194111_10106856
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2232
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039606	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194111_101068565	F039606	AGGAG	MDKDRAIITQVAAKIAAELVNTSKDTTHKLGEFAALFMGVKDIIFDAIDGSADDAQIYELAKKTFNATEVGSGDIVNASDPFPKGPDPLEIAGQQHGEIPEWLIRACKRDGITKVWDNRDGLSVNPKRPWFKAVDADKAYWPPRTKTK