NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206353_10803802

Scaffold Ga0206353_10803802


Overview

Basic Information
Taxon OID3300020082 Open in IMG/M
Scaffold IDGa0206353_10803802 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1297
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029075Metagenome / Metatranscriptome189Y
F095123Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0206353_108038021F095123N/AGLMSFTSLVTCEAAMNALSREGCRHFEALDQVDEDFGRDIFEVEDPVVKESGGALFDRMWGSYGREVVRARAEAARAQVTLSFTRCLLDAVCACVC
Ga0206353_108038023F029075GGALVAAQVQDFGPAHATATTGFLAASTAEGGNECGGSVSEFFDFTDSGSSAEWTEESSEEDLDYFAALDVAAAEAALHAADAPGVPGPSTGHRRRRAVAKRRISAEEGARLRVSRAGRQELLSLPAASGVGEGELRSLFAGEELRIMLFNYREMGIIPKVEPM

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