NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206352_10346466

Scaffold Ga0206352_10346466


Overview

Basic Information
Taxon OID3300020078 Open in IMG/M
Scaffold IDGa0206352_10346466 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001296Metagenome / Metatranscriptome728Y
F010923Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0206352_103464661F010923N/ADPQPKLSLERAAGSERKSGEFVRRTGRQQTRLNALIPRDAKVPEGSGDCGRGRPNQIAEVQRAPGSEAAATGAIRKAVVEPKGRTGTEAIWEEAK
Ga0206352_103464662F001296GGAGMEVAERWQLLRASEKPLRATGSEQEAASGEPGSIDPAAGESSHRGAERRNVRRFCSQCSMPCMPVESQAGNQVTWN

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