NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10134444

Scaffold Ga0194113_10134444


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10134444 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2085
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y
F013891Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_101344441F013891N/AKKPSGLLMDIVMYPEFLALRLYEDNFLQFEGTKKEMVIDYVGKVKRLLESYGVRCELEGKPSERVL
Ga0194113_101344442F011938GGAGGVREYYDTVHVVFIHEENCHGTVEQLGAWASIVKYSKDGMEYNELMDNEDFSIIDEISFKHIEESE
Ga0194113_101344443F000671GAGGMEKILCYSCNKTKNKLDVKKSSLLPINLFICETCSSSKFEPRWVIILAGRSQGPDYVKEHIIKRRYVGNEISASELLV
Ga0194113_101344444F002060N/AMNLDYTAVVIAVLAAILSGMGTAIVAGIRDNKKEKIRKSEREQDHLKIEVKDLKIELYKIERELTEWKDKYYNTIQELIAVKAELEDTMIKLSYIDHKIHEDLEHLDTEF
Ga0194113_101344447F010248N/AVTKSERIRLLEMEVVRLQFQIDYVSRAIEILLAENKLAGPEMDAGKWYKTKLDKDK
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