Basic Information | |
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Taxon OID | 3300020074 Open in IMG/M |
Scaffold ID | Ga0194113_10119442 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2257 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
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Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.1786 | Long. (o) | 29.658 | Alt. (m) | Depth (m) | 200 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013631 | Metagenome / Metatranscriptome | 269 | Y |
F031454 | Metagenome / Metatranscriptome | 182 | Y |
F081258 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194113_101194422 | F013631 | AGGAG | MILDVFHYTTSRWDWHDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDVSMVMSEPRCYADTLQWVRKFCGSFSILPEFSVAV |
Ga0194113_101194424 | F081258 | N/A | MTINFTRLSAGIYEVQKDSNTVGFIRKATASKWIVTDVVDTPQHVSKTLKEAKDACINLIIFEVDNTPADVYNDSVEVDKVNPELNKKLEGSLHCYKQVPGTDKFEEVCPSEFGFAKPTLEPIEF |
Ga0194113_101194425 | F031454 | N/A | MHESTLDLFCNHDSDEFADEYAMEIERKAAELEVTVDYYLAEFV |
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