Scaffold Ga0194113_10069057

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10069057
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3272
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F009071	Metagenome / Metatranscriptome	323	Y
F020144	Metagenome / Metatranscriptome	225	Y
F020347	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1006905712	F009071	GGAG	MPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEEECRQYAYENYTDKEQTNMCLIDWEGRDWEV
Ga0194113_100690573	F020347	GGA	MSSKTYLQYVAIPALAFFFTAIISYNLTPEKTPQHTSTVSGSSGKLKCSLTSCVIRDD
Ga0194113_100690576	F004208	AGGAG	MTYGLNSEAKAFSYTREELFECITKIVAHPHTAITKHDQSRALAIMVVFDDYLTNYTESDNNGSHYVYEQDATDFTDFVRFKLGIAGLPDGIDVDEVLK
Ga0194113_100690578	F020144	N/A	MSNFYTLLPGTDVLRSKIDVFTWTNPENENETERVELTVDNAGIFITSCSGGAREDMSISQKDLAIALAHGILEAYGVG