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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020074 Open in IMG/M |
| Scaffold ID | Ga0194113_10065788 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3380 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -6.1786 | Long. (o) | 29.658 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194113_100657881 | F001106 | AGGAG | MSFETLKIADLKKIAEDFAVGIDGLKNKADIIAALAEEGVTWSVYNKTIEKMEEEDMSVEVLPKFDPRAEQPENTVLVRMMRENFRYDTMGFTFTKEHPFVAMSNDEAQEIFDKEEGFRLATPREVQEYYN |
| Ga0194113_100657883 | F001229 | GAG | MSSIVDSVLSMNLDVYRQFEIQDSNTGAIVRNWNFYKTVPCHVKGIISNSATIRSGDKQVFSNKYLNDQIIQVRTAEKLTTREKVTNIRDSDGSTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSAMKRSENQQIGQ |
| Ga0194113_100657884 | F001900 | GGAG | LDNSGILVQASSGLERMMYANQKGPLKDSTVAQVSAYVYYEAAVLSKLTSSAKFKGAFTKIIFDQINTDFGNYIDALARTRTKSLHHVYEWKKVGVPTARLFRLKKISQEGVSFKINYEFLPSRSMVPSSTRKRRHVFVNKASVIEEGKPLVIRPKNAERLVFEYNGETVFMPKGQPVTVRRPGGSAARNQFTLAHSRFFSGNLVNQSIKRSGFQRIFNSGITKALRVPPNIKRVQYSFSPNMIRSQADSALMLAFGGAM |
| Ga0194113_100657885 | F000258 | GGAGG | VTADYKLDAMLELRKYLWKELYTRNIFDKDAYWSDNLDENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGLSYEENWLICCEQILFNIYATSVADIIEIRNYMTDEFRRMDDSASDINKWTGLSNKFKFHSIFIADISPTAPSEELQGFFSAEVILEVKYSRITDNVGRFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |