Scaffold Ga0194113_10049266

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10049266
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4106
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F010248	Metagenome / Metatranscriptome	306	Y
F011938	Metagenome / Metatranscriptome	285	Y
F017101	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1004926610	F000671	AGGAG	MEKILCYSCNKTKNRLDVKRSSLLPINLFICETCYSSKFEPRWVIILAGRSQGPDYVKEHIVRRRYVGNEISASELLV
Ga0194113_1004926611	F011938	N/A	EYYDTVHVVFIHEENCHGTVEQLGAWASIVKYNKDGMEYNELMENENFSIIDEIVFKHIEESE
Ga0194113_100492664	F017101	AGAAGG	VQEKMNILESIVQDVAKALFEKWANALPEDQRSEDVIANLSKNSTESTYFVVQMFMEKFNQAAEELKSQPDE
Ga0194113_100492666	F010248	N/A	VTKSERIRLLEMEVVRLQFQIEYVSKAIETLLAENKLAGPELDAGKWYKSKLDKDK