Scaffold Ga0194113

Basic Information
Taxon OID	3300020074 Open in IMG/M
Scaffold ID	Ga0194113_10014653 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020074 Open in IMG/M

Scaffold ID

Ga0194113_10014653 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9020
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (88.46%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9020

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (88.46%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.1786	Long. (^o)	29.658	Alt. (m)	Depth (m)	200
Location on Map

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Source Dataset Sampling Location

Location Name

Tanzania: Lake Tanganyika

Coordinates

Lat. (^o)

-6.1786

Long. (^o)

29.658

Alt. (m)

Depth (m)

200

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004051	Metagenome / Metatranscriptome	455	Y
F005177	Metagenome / Metatranscriptome	409	Y
F018349	Metagenome / Metatranscriptome	235	Y
F031384	Metagenome / Metatranscriptome	182	Y
F040535	Metagenome / Metatranscriptome	161	Y
F047643	Metagenome / Metatranscriptome	149	Y
F078406	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1001465313	F078406	AGGA	MLSTATALIKATEDAIFDDEAMSFAQEFMRRAKDLDEVDFAKSIYIYSTLVASLAVDKAMKVLLTKEQVVELCSCIDELEKIQDEVINGK
Ga0194113_1001465315	F004051	AGGA	MTINGYTYRVGDLFTTLKSKKTGIIKEIIPNASGSVRVLLELPTKETRWTSVSAKSLE
Ga0194113_1001465318	F005177	GGA	MTARFRVEIYDEVKDNDLTLYFDQGVDKDYLTELAFSNMYKFQGNIRAYVYDDLNQKKTTCLVLNREFLPPKPG
Ga0194113_100146532	F040535	AGGA	VLVLDYTVEKEGNLITVSDRLMINERQINDLMDSLVANGFTVEAMSVAPAIL
Ga0194113_1001465322	F047643	AGGA	MYYKLHTPLGKACQQAYWDAEWSGLDPYYLGNNVFEIGTGHVEKVTSLISKYKLDILVESEYTPTGYKTDRRQYGLQRRF
Ga0194113_1001465323	F018349	AGGAG	MDYRDGFEDGVKFTREVIIANIRKWAETQSDYDAQTLDWVADRIEYGTLDDSLG
Ga0194113_1001465326	F031384	AGGA	MPNWCFNGLTIEGNPDSVNNLIAQMNKPFVMTHDSWNMESNEMEAIETTYSNPVFAFHNIWNHRLENITDLEYTQQMPKST

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194113_10014653

Overview

Ecosystem & Geography

Associated Families

Sequences