NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194113_10003867

Scaffold Ga0194113_10003867


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10003867 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19851
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (63.16%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F012571Metagenome279Y
F095373Metagenome105Y
F101035Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_1000386717F012571N/AMVNNPDDVIGVCSECKSDQPMSYMERNPFAHEGSAVPCKYCGGVVIITYRETRDNSLNQSDRERGVG
Ga0194113_100038672F095373AGGAMAAGKLNYVVVYEGLSQVYGCASKKIALESAPPEGYSLDQKKILFITFEPDQKSLCVYEVPKEEIITAEIKKKKNENE
Ga0194113_1000386720F004789AGGAMTIKGTYKNPTEKACWIFCASCNRCQDKGRYTKCKGCSGRFDPEGTIDPDVDDYCDCKNGNLRWKTKKGKLLITKFKTNPFKGTVKYEKKSQDERDWDSYVKDMREKLNDPNWDPITIIDED
Ga0194113_1000386733F007028AGGAGMPKITRTAQEQSTGSPIEQVINLMAQEISISTNPVFICGVNRKINIGNFENIDVYAGVTIPLINIDPSDREALSEAVKAAAVDGFSMVSRETGERYTLIKESQQGK
Ga0194113_1000386738F101035AGGAMEAVIVATIASVGAVLVALVQKGRAENKVDHNTVTDMIVGVKDDIISLHFKIDHVDDQVDKVDDKIDMHIKSHRRK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.