Scaffold Ga0194113_10000564

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10000564
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48892
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (38.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028492	Metagenome	191	N
F047652	Metagenome	149	N
F066407	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1000056431	F066407	N/A	MKWPLDKEPKKFATDLTVPQRSRGDRYWVRITTEHWDIITQWRGTPRQIEQNCWSWYGRDALAVELELIVK
Ga0194113_1000056447	F028492	N/A	MRSLCRKQLGRPKLSDKIVIDESIDVAVGDCIIVIKEDGSIGQVILPEVSNPAQESKGYKLTLDVLEFIDKEKGSLIRKENNRRKYN
Ga0194113_1000056450	F047652	N/A	MVKKRDNVVSMEAPVMMIPDDQDRETPVLMNRHYIDWIIDHARKKKLSIQGYQLRGKNIEITFKNPKHASIFALTWSEDE