NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206356_11121814

Scaffold Ga0206356_11121814


Overview

Basic Information
Taxon OID3300020070 Open in IMG/M
Scaffold IDGa0206356_11121814 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1293
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026424Metagenome / Metatranscriptome198N
F035981Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0206356_111218141F035981AGGMNNDDSSGDDILGADEILGADEILGADEILAGDESSGDESSGDEVGLRLFRRKKKGPKKLDPVVQSRLAQSGVVVKSHGYSKGRSQSIGFESLAIQPGATVDVPANPQVLFKPKRLVYTGPANTFLIQDVKIGRSSQFVASGAQSADAYPPTSTVDNMELDTARPGVVITLRIQNTSG
Ga0206356_111218142F026424AGGAMMNLSLAQVKKFGSEIQSLKNKHEKALEKADHVIETGVDATLASATAFGLGVWQTRADHQRLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSVGNGALAAHFHTVGRGVGKEMREKAGLPPVAIMGGEGPAEGGANLSDEALLEMAKRRG

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