Scaffold Ga0197907_10062981

Overview

Basic Information

• Taxon OID: 3300020069
• Scaffold ID: Ga0197907_10062981
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1022
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056805	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0197907_100629811	F056805	AGGAGG	MRNRLLTMLALAALACGAVAATATAGPGHGQAGKGKLYLFRGELMNASSTSVQVHVEGGNHAALRALLGQSQDQSFALGSTSEILLWHKGVPTVGAVTDLKQGDWVQLRVRAKGSLADVEATPVSVVADRGTNPGKAAHPLFLYRGTVTGPQSGGHIALHVTGGNHLALKLLVGQSADQTFSYDAGTIFLLWQGKVPTVIDPSQLKAGDRITVRIRAPHASTLAQIEAPPAVHVGDHEPANAATNV