Scaffold Ga0180118_1000590

Overview

Basic Information

• Taxon OID: 3300020063
• Scaffold ID: Ga0180118_1000590
• Source Dataset Name: Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 608
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180118_10005901	F051769	N/A	RVAASVVLAMMGLGLGLLLLGSRRSTPLPVARCPIHGIAYDTELEVCPDCTKTDAAGGTGGAR
Ga0180118_10005902	F095084	GGAGG	MSGMPALYCRTCNAFREIEDWRERGEALVIALEPCGHEIRRRAGIEWPLHTVAA
Ga0180118_10005903	F013143	AGGAG	MLSRFVLGAIVGGIAVYLWGDEIRRFANTKSRTARLAAADTLKAVQSTAEEMFDSAKDQVASTLQSGQDAIRPARANRDR