NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193724_1029276

Scaffold Ga0193724_1029276


Overview

Basic Information
Taxon OID3300020062 Open in IMG/M
Scaffold IDGa0193724_1029276 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1174
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9866Long. (o)-107.0007Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033545Metagenome177N
F034605Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0193724_10292761F033545N/ALIGPGEGFLKRVITRKNGGRGRDLLVTLFDQLFENAGTAAEAGLNLRHGMLSISLADEKVDCALQQRQERKQEKEQPASKTAESKFQR
Ga0193724_10292763F034605N/AEGDVISYAVPPRPDIARFSIEREDEDEFGQPLRTAYKLLGRTNAVSFSVAYQLMKYASVQLGYEYAITTHDPLQYENHLVQANIAVAY

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