Scaffold Ga0193716_1045105

Overview

Basic Information

• Taxon OID: 3300020061
• Scaffold ID: Ga0193716_1045105
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2081
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9365
  • Long. (^o): -106.9428
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018637	Metagenome / Metatranscriptome	234	Y
F065182	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193716_10451052	F065182	GGAGG	MSSHNDSFAASGSSPTRSDFLCENHGSVFLLRPISLSALAWIEEHLPFDRITFGDAVVIEPRYVCAILVGLQDDGLAVSRG
Ga0193716_10451053	F018637	GGCGG	VDKKLAAGKIRARLERRLATLLGCEVVDLPRMKIGTLIHTSFLLWGDGEELGGFQSTMSGVLQMLGNEIVWDIEQKEEETAKVVIN