NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163151_10391308

Scaffold Ga0163151_10391308


Overview

Basic Information
Taxon OID3300020057 Open in IMG/M
Scaffold IDGa0163151_10391308 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)711
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055323Metagenome138Y
F068307Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0163151_103913081F068307AGGMIRTTGTASTAVTLTPAEEKRADKDHLLTALINVCGVPYAHYRTHPIVLALKRDGITQFNMDFIHMTAADIDALQCEKSGALVPLELNFKMIMRAFLAFYHHQSHKKRGGINVLDTTLPVQFKTFRNSEYDPTKEITPWGLAIT
Ga0163151_103913082F055323N/AMTKHAHRVSNLANGDVDLVGIFDQTCSSFYGRVILITFEFACKSIYSFGETLE

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