NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181574_10366531

Scaffold Ga0181574_10366531


Overview

Basic Information
Taxon OID3300020056 Open in IMG/M
Scaffold IDGa0181574_10366531 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020114Metagenome / Metatranscriptome226Y
F077968Metagenome / Metatranscriptome117Y
F085690Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0181574_103665312F020114N/AMKPQTFKHISRCIDKHGVHHLDALDEHGRHWYATMQQKEEPWLTYVQHWELRTH
Ga0181574_103665313F085690GAGGMTYIITYYYKNDLEKRYQKHETMRMAIAAANLLIAKGDYVIDSIVTEYNHEWQETGDGV
Ga0181574_103665314F077968AGGAGMTKDTWKKWTIWTSIYVFDYCVFSWRNHMWPHLDGYAEEGMMKTLFWHYINYGNCNTYYD

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