Scaffold Ga0181574_10366531

Overview

Basic Information

• Taxon OID: 3300020056
• Scaffold ID: Ga0181574_10366531
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 852
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020114	Metagenome / Metatranscriptome	226	Y
F077968	Metagenome / Metatranscriptome	117	Y
F085690	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181574_103665312	F020114	N/A	MKPQTFKHISRCIDKHGVHHLDALDEHGRHWYATMQQKEEPWLTYVQHWELRTH
Ga0181574_103665313	F085690	GAGG	MTYIITYYYKNDLEKRYQKHETMRMAIAAANLLIAKGDYVIDSIVTEYNHEWQETGDGV
Ga0181574_103665314	F077968	AGGAG	MTKDTWKKWTIWTSIYVFDYCVFSWRNHMWPHLDGYAEEGMMKTLFWHYINYGNCNTYYD