Scaffold Ga0181575_10004771

Overview

Basic Information

• Taxon OID: 3300020055
• Scaffold ID: Ga0181575_10004771
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9435
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015588	Metagenome / Metatranscriptome	253	N
F041165	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181575_1000477113	F015588	AGAAG	MMKLSGKGSMDTLPPELVHNIFTRACMMEMEEKFPLNYRFYTDHGEIEFSSNDLVVRKDRVVADLSNFVYNHIFTSMRLPILHFEKRIGNKVVYSQHVHLWNDEIIQRHTGKIPKSPLESYLWNMMMLIH
Ga0181575_1000477118	F041165	N/A	SCFKLALIHALETCEPVDFVRVFKLNRAPADEWIRRRAYPSLERFLDFHPDIEMLSPDWFTFMINATWIMTSLNWIESDEDGASLKLHHEL