NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181594_10152466

Scaffold Ga0181594_10152466


Overview

Basic Information
Taxon OID3300020054 Open in IMG/M
Scaffold IDGa0181594_10152466 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1224
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED234(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036017Metagenome171Y
F077972Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0181594_101524661F077972GGAGGMASTPVILLLKRTGNSADRPDTATVQTGEAALSFGGAEPGMYFKDSAGAIRKVGPT
Ga0181594_101524662F036017N/AFFTGEVISDRFASDGTEKTTYNNYKVIGVGNGTTPLVPSFAPIFNSIFISIDTDNSWSVIDNETLQAPAGLPTIGDYFTTEMRFGCNCPDYLAREDFNLYKYNLKRRYPYTLPQDLKPGSYDAGSDYFADRTSPSRDLPGFTRDFGFLYVKKLIDLPRYTDSATTYSDPNLLYFAPRWCKHIYASFWDLQNRFGKDMFPYVWLDQPSDEPMDDRYREQFQRNLEKQTTFEKRQEHLRWWEKYSPSQNTVPVHMMYADMHPTMVKTLNFDTLASGVSSPMSASGFEMFQFDQYNPFEPIDPATLQKYDGGTYASGVLTSGSALIFDGGSYANGALIPPPTQPSSINGGTY

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