Scaffold Ga0181594_10090510

Overview

Basic Information

• Taxon OID: 3300020054
• Scaffold ID: Ga0181594_10090510
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1804
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F091790	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181594_100905102	F000325	AGGAG	MKTAEGNDKLGKGCIVVSRPVGKTCPSSCDFLGDGCYAEATENQYKNARTAAFQNVITEKGRIRSMILDAIKRNKSIRWHERGDWFNDGVLDEDYVNNVCAACESVIESGYTLPDMWFYTHIYDSRLAAMSKYMSVYASVHNADDMIAAKLAGFTMFAWCDKDMAIAPKRPRGKIKKTAWQAELPKLVVLHGEQFITCPEIRKGRDFVTCTGNKTSRACNMCPTGKKNVLFPCH
Ga0181594_100905104	F091790	GGAG	MFDEVGCGSDCTVYRTKMGLFKEYYSKSEATEAHNIQSELASMNLAPEVYSRVCRVRMPEGKLSDYGFYTEEAELLELCDCDYDCSCSMKTERPRLALCETVEYWTGWEYVDFHQGNFGY