Scaffold Ga0181594_10074809

Overview

Basic Information

• Taxon OID: 3300020054
• Scaffold ID: Ga0181594_10074809
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2073
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F027171	Metagenome / Metatranscriptome	195	N
F088830	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181594_100748092	F001841	AGGA	MGLMTPFSRPNFFLGLMRVAAWLFWRDPVAKSEPPQPKRPRKPILGYNVGDIPYELMAVVRIEWYRKGMAYEVEEYQIEECPDAQAQFQYIVGTALRQGADVAVLTQYEPAALGVEE
Ga0181594_100748093	F088830	N/A	MDHTTQIDNLKLSPWYYAVLAAKAVLQQKITEIEEAGIVSPSFYIARLEELEDLEQFLKMSWDHWMDSLSTRQTAVEETK
Ga0181594_100748094	F027171	GGAGG	VSRVLEIDSLEFDPDGLLRVIAVVDEVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELCKLIAERVDDWAPI