Scaffold Ga0181595_10166558

Overview

Basic Information

• Taxon OID: 3300020053
• Scaffold ID: Ga0181595_10166558
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 998
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049595	Metagenome / Metatranscriptome	146	N
F067690	Metagenome / Metatranscriptome	125	N
F084181	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181595_101665581	F084181	GGTGG	MKTKTYDVQIEAIVTKTIRVNAVDKDAAYELAHEIFTVTRDNHEERYEQHTLNIVEVSDEDRNEKPAWERGD
Ga0181595_101665582	F049595	AGGGGG	MQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTEDFHIRWGDALVIDHRFANDIAQQLIEEGWIIE
Ga0181595_101665583	F067690	GGGGG	MDKVIELELELRDGGSYYLCDSKFSVMSGKIRRHVNAVESYYQDYASVNGFAVKHTYEEVVEMIRKAKLGYYGMKARGMK