NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181555_1000237

Scaffold Ga0181555_1000237


Overview

Basic Information
Taxon OID3300020051 Open in IMG/M
Scaffold IDGa0181555_1000237 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54309
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (23.94%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007167Metagenome / Metatranscriptome356N
F015725Metagenome / Metatranscriptome252Y
F021101Metagenome / Metatranscriptome220N
F039605Metagenome / Metatranscriptome163N
F042805Metagenome / Metatranscriptome157N
F073488Metagenome / Metatranscriptome120N
F082621Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181555_10002371F073488N/AFHVRDVQKLLREIILPRLCDLEQEMQLLRKTTWPICQAMREHYSFKIDENANISRQLKALVDPEEYQRIVHIKNEFKHRYCDKFRRPF
Ga0181555_100023717F082621N/AMNFCPTPRTYGVFPRPTIVVTKDMSQHIYMSKVPKGVDVRLIFYRKGKAHTRTLKVEYALDPEIDSE
Ga0181555_100023755F042805AGGMKVTFPGWLGWFEENKVSSIENCFIEIKDVYAEKLLWPSIYMEEDGYDSDDDLERIWHYSDAKSYLEEYLEKNGYNRDYYHIMHVEATFHEPDKEPRKLKFYVKEIACEIRHPGGNCPDEMFKWWVCEDKYGDFDEYINDIPDENYRIFLYCLNKAWQDVKALPECITKLIDKKRSTIKDDSLRVADEDGRTG
Ga0181555_100023756F007167N/AMEVKDAVFGFYLSPSSAVYIPKEGTETKKMKDGTIIKVPKYMYHPLTIEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIDNPEPEKLREALTIIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWITTTTKRLGNPWDLKNKVERDRKKAELFNIISNLLEDKDKIPYVSRMLIDRFR
Ga0181555_100023766F021101AGAAGMWFVPLFIGIHSFFEKKLSPKKTHTIVNLFHMASVFTWNPGFVVSKSYFLADFFLLYKNRQAYPGLWQLLLAHHVVSYAILVTEQESEDVDLALKWAEVSNLSLAVYELYPNTFTKTMRVIIYPWSRCVMLPMVLVESTKTLGVKALALGVPIVGGSFWWSWKIIKDFLRK
Ga0181555_100023769F039605N/AMSLSFESLLSPSYANSVRTPNSVGSATNNYNEAISNFRENVSMSPFVQKARFSPKNALVILAFFLMILSSIGTTYAIEQIKPTPAQRDALDILKSAQMKFYNSRQGRKTIASVARNVGIKNLASQKEYMKLAINSNKMVNKIVMRSKIFTISTVRQALDLFGTLGADTQKTVANASGTISGLSGVMFNVVKVAERIAEKDLGPIARITLWSSSLAVGASMLYGLNPVQMAAIAKGVTGLIAKMYRERKSYYDMAATVYKYVVKGVRKMKRSRAVTSN
Ga0181555_10002379F015725N/AMKENAFMLMSMIMVIALHDLFSMFLLRSTKSTCKLMAWGGIGKIVFIRWMLLIPAIFFTIMFTSFFATLAVKTCNDGDKDCTIDLINYKMILVGIALGLFVMAIFYAWKRRKEGSVEYLIIASLMDSNQDGRSRFLDECKKSRDFKAIMAKQNT

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