Scaffold Ga0181555_1000156

Overview

Basic Information

• Taxon OID: 3300020051
• Scaffold ID: Ga0181555_1000156
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67216
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (16.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062272	Metagenome / Metatranscriptome	131	Y
F065620	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181555_10001561	F065620	N/A	MKTDISELNTIISEFDHKMAKIELAINNGGNSLGKQEELLLDYQMYQARKFLAIKEIN
Ga0181555_100015693	F062272	N/A	MYDKNLIANVADKIIEEVDEHIDNTIHWQLDPSEFQLNEFDDLYELELQVKQQLLFSLIKRVTK
Ga0181555_100015697	F065620	GGAG	MENNISELNTIIGDFDHKMAKIESAINNGGNSLDEQENLLLDYQMYQARKFLAIKEINKLINK