Scaffold Ga0207193_1235781

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1235781
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1400
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F007644	Metagenome / Metatranscriptome	347	Y
F038241	Metagenome / Metatranscriptome	166	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_12357812	F000263	GGAG	MIRHNELQPHLQRMVEAEVSGLDIMHGELKNLMLLGEKELERTLIVEQESGEAMDSMERTYAEGYLDALVSLYQLTYDLSFAIGDKNA
Ga0207193_12357813	F092053	AGG	MKLSKEIKEDLQDQADQIIYFESAMSSEDKASKAVYQRLVEIYKVGYNNGRNND
Ga0207193_12357814	F007644	GAGG	LTKSSKFIEYMKLHLLSLEQDLEENPASIHVVDIEGQIYATRHLLSVALDIMEESERV
Ga0207193_12357815	F038241	AGGA	MLGYTKEDLDQMSNAVHDAKLFYILNSDVIKVDEDPIVEWLLKTNDFLQGLWAEGYFD