Scaffold Ga0207193_1229334

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1229334
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1429
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020863	Metagenome	221	Y
F026864	Metagenome	196	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_12293342	F026864	AGAAGG	MRLQMDTLTKEEEMSEQEKTAQFVFTVVIAPDNKQYDVELWDFAGTEPKQLATGQACNWRTALGEALSRIDLPSDKVEKTINDLVKEGVEDEGV
Ga0207193_12293344	F073256	AGGAGG	VKLQEVDTIQDLREWVEENMPGARLTVDSMGDVVIHTGLHSTMGGYLHEREEEE
Ga0207193_12293345	F020863	GGAGG	MQTTIEEVRSLVATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSKYGSGHWEPRGFSDYLGGSKAEAAHSLRKLIAGIHTGLLIAEKKEVKA