Scaffold Ga0207193_1211446

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1211446
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F017972	Metagenome	237	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_12114462	F017972	GGAGG	VKTRHLRLVTQEHSDTTTIKSTALSAFGPVSPGSTTLLAQETLRVNQLRQLTELLNSLESVVANLNYKSSTALDTLLTATQGVRAALSATPIEGAGTDVNGR
Ga0207193_12114463	F044984	GGAGG	MTDEVKRRMATASRKAVRDRNYRRARDRALARLAHLHPDTYKQLLEMEKKEDELQGKTWIGIDGSTTVPVVGVHTRATGADDLAYTSSAGENEGNDGGEA
Ga0207193_12114464	F001477	AGGAGG	MSNIYTIHPPKSDLILFYEILEPNTGIRWGGGDAKSAMQWLFLAPIGSRLLVSAWDSDEEDAHLVGQTIDITEXXXXL
Ga0207193_12114465	F000821	AGGAGG	VNKEYLEAKFDLCINQAEKNIKEEEIAEAIANLRRANSALSQLFGFEEEENE
Ga0207193_12114466	F003212	GGAGG	MKDRYLVTVEIETYDGDPRTWDWDRIFTGEDDVKVISSDFKGRVLPEEEASE