Scaffold Ga0207193_1149701

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1149701
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1962
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_11497011	F002433	N/A	FVIVLLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIENRLDQLLLEIALKK
Ga0207193_11497012	F005503	GGAG	MTSSEIGLFVLMAIACILWAIVSYSVGYKEGHKEGYQRGKAVGRHISAQAVR
Ga0207193_11497013	F001897	AGGCGG	MAFMDDYEGNKQRTDRWIATYPQGRLETLIIEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMALVKTETPSADYDYWTTKHGDVPSYQTREEAEEIKDTAWEADAAPMCSHGSMRWNQNKPDAPKAWAGYFCSEKVKENQCKPRWYVLTSDGTFKPQV
Ga0207193_11497015	F000403	GGTGG	MSDYIEIIHPQSMTAKLLCNGLVVEEYKIEQCDKCSQLRRFDKFGYQKGYDRTDNIIWFCGDCR
Ga0207193_11497016	F000903	N/A	MITRADEAQCMVSAIEHCKDRNADHPTRFQKNLSWFEYVAQMAESMAAGMIMARRLGYDYQPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRDDRDIAVLVTGHSPKLHIIGWIPVAIAKKPRYKNTSQNNWTVPQTNLQPIETLQWSNYAHPFV
Ga0207193_11497017	F003182	GGAG	MHILLFDCSICKKLYGKPKQRFGLKKGAELTEHEWFAQCMGCGTFGIKIVDDARIGELSQ